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Table Of Content New to the PrimerQuest Tool? Primer Design using Gibson Cloning Method High-throughput primer design by scoring in piecewise logistic model for multiple polymerase chain reaction variants Designing PCR Primers Cautions Primer- Definition, Types, Primer Design Online Tools, Uses The number of consecutive Gs and Cs at the 3' end of both the left and right primer. New to the PrimerQuest Tool? Here, we used SADDLE to design a set of 60 primers to detect 56 actionable gene fusions for non-small cell lung cancer (NSCLC) across six genes (ALK, ROS1, RET, NRTK1, NTRK2, and NRTK3). The number of primers are lower than 56 × 2 because the same exon can be fused with multiple partner genes or exons. We detect the fusions in complementary DNA (cDNA) reverse transcribed from RNA, in order to limit the complexity and length of the detection targets. For each fusion of interest, the primer set includes a forward primer (fP) targets the upstream partner gene and a reverse p...
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